Scientific Publications

Antibody light-chain-restricted recognition of the site of immune pressure in the RV144 HIV-1 vaccine trial is phylogenetically conserved
Wiehe K, Easterhoff D, Luo K, Nicely N, Bradley T, Jaeger FH, Dennison SM, Zhang R, Lloyd KE, Stolarchuk C, Parks R, Sutherland LL, Scearce RM, Morris L, Kaewkungwal J, Nitayaphan S, Pitisuttithum P, Rerks-Ngarm S, Michael M, Kim J, Kelsoe G, Montefiori DC, Tomaras G, Bonsignori M, Santra S, Kepler TB, Alam SM, Moody MA, Liao H-X, and Haynes BF
Immunity 2014; 41(6):909-18.

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The association between the ratio of monocytes: lymphocytes at age 3 months and risk of tuberculosis (TB) in the first two years of life.
Naranbhai V, Kim S, Fletcher H, Cotton MF, Violari A, Mitchell C, Nachman S, McSherry G, McShane H, Hill AVS, Madhi SA.
BMC Medicine 2014; 12(1):120.

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Novel and adjunct treatment for drug resistant tuberculosis: A public health imperative
Padayatchi N. Naidoo K, Naidu N
Mycobacterial Diseases Journal 2014, 4:5

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The Beta-Poisson Distribution in Wadley’s Problem
Leask KL, Haines LM
Communications in Statistics - Theory and Methods 2014; 43(23): 4962-4971

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Structure and immune recognition of trimeric pre-fusion HIV-1 Env.
Pancera M, Zhou T, Druz A, Georgiev IS, Soto C, Gorman J, Huang J, Acharya P, Chuang G-Y, Ofek G, Stewart-Jones GBE, Stuckey J, Bailer RT, Joyce MG, Louder MK, Tumba N, Yang Y, Zhang B, Cohen MS, Haynes BF, Mascola JR, Morris L, Munro JB, Blanchard SC, Mothes W, Connors M, Kwong PD.
Nature 2014; 514(7523): 455-61.

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The need for multipurpose prevention technologies in sub-Saharan Africa.
Abdool Karim SS, Baxter C, Frohlich J, Abdool Karim Q.
British Journal of Obstetrics and Gynecology 2014; 121 (Suppl. 5): 27–34.

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Microbicides and their potential as a catalyst for multipurpose sexual reproductive health technologies.
Abdool Karim Q, Baxter C, Abdool Karim S.
British Journal of Obstetrics and Gynecology 2014;121 (Suppl. 5): 53–61.

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Role of Education in HIV Clinical Outcomes in a Tuberculosis Endemic Setting.
Cohen GM, Werner L, Gengiah S, Naidoo K.
Journal of the International Association of Providers of AIDS Care 2014; 13(5): 402-408.

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HIV Transmission Risk Behavior Among HIV-Positive Patients Receiving Antiretroviral Therapy in KwaZulu-Natal, South Africa
Shuper PA , Kiene SM, Mahlase G, MacDonald S, Christie S, Cornman DH, Fisher WA, Greener R, Lalloo UG, Pillay S, van Loggerenberg F, Fisher JD.
AIDS and Behavior 2014; 18(8):1532-40.

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Sensitive Tenofovir Resistance Screening of HIV-1 from the Genital and Blood Compartments of Women with Breakthrough Infections in the CAPRISA 004 Tenofovir Gel Trial. Journal of Infectious Diseases
Wei X, Hunt G, Abdool Karim SS, Naranbhai V, Sibeko S, Abdool Karim Q, Li J-F, Kashuba ADM, Werner L, Passmore J-AS, Morris L, Heneine W, Johnson JA.
Journal of Infectious Diseases 2014; 209(12):1916-1920.

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Meeting the Sexual and Reproductive Health Needs of High School Students in South Africa: Experiences from rural KwaZulu-Natal
Frohlich JA, Mkhize N, Dellar R, Mahlase G, Montague C, Abdool Karim Q.
South African Medical Journal 2014; 104(10):687-690.

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Developmental pathway for potent V1V2-directed HIV-1-neutralizing antibodies.
Doria-Rose NA, Schramm CA, Gorman J, Moore PL, Bhiman JN, DeKosky BJ, Ernandes MJ, Georgiev IS, Kim HJ, Pancera M, Staupe RP, Altae-Tran HR, Bailer RT, Crooks ET, Cupo A, Druz A, Garrett NJ, Hoi KH, Kong R, Louder MK, Longo NS, McKee K, Nonyane M, O’Dell S, Roark RS, Rudicell RS, Schmidt SD, Sheward DJ, Soto C, Wibmer CK, Yang Y, Zhang Z, NISC Comparative Sequencing Program, Mullikin JC, Binley JM, Sanders RW, Wilson IA, Moore JP, Ward AB, Georgiou G, Williamson C, Abdool Karim SS, Morris L, Kwong PD, Shapiro L, Mascola JR.
Nature 2014; 509(7498):55-62.

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Compartmentalisation of innate immune responses in the central nervous system during cryptococcal meningitis/ HIV co-infection.
Naranbhai V, Chang CC, Durgiah R, Omarjee S, Lim A, Moosa MY, Elliot JH, Ndung'u T, Lewin SR, French MA, Carr WH.
AIDS 2014; 28(5): 657-666.

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Adherence in the CAPRISA 004 tenofovir gel microbicide trial.
Mansoor LE, Abdool Karim Q, Yende-Zuma N, MacQueen KM, Baxter C, Madlala B, Grobler A, Abdool Karim SS.
AIDS & Behavior 2014; 18(5): 811-819.

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Impact of an Adherence Intervention on the Effectiveness of Tenofovir Gel in the CAPRISA 004 Trial.
Mansoor LE, Abdool Karim Q, Werner L, Madlala B, Ngcobo N, Cornman DH, Amico KR, Fisher J, Fisher WA, MacQueen KM, Abdool Karim SS.
AIDS & Behavior 2014; 18(5):841–848.

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Measuring Adherence by Visual Inspection of Returned Empty Gel Applicators in the CAPRISA 004 Microbicide Trial. AIDS & Behavior 2014 18:820–825
Gengiah TN, Mansoor LE, Upfold M, Naidoo A, Yende-Zuma N, Kashuba ADM, Abdool Karim Q, Abdool Karim SS.Measuring Adherence by Visual Inspection of Returned Empty Gel Applicators in the CAPRISA 004 Microbicide Trial.
AIDS & Behavior 2014 18(5):820–825.

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Monitoring microbicide gel use with real-time notification of the container’s opening events: results of the CAPRISA Wisebag study.
Gengiah TN, Upfold M, Naidoo A, Mansoor LE, Feldblum PJ, Abdool Karim Q, Abdool Karim SS.
AIDS & Behavior 2014; 18(5):833–840.

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Disclosure of microbicide gel use to sexual partners: influence on adherence in the CAPRISA 004 Trial.
Mngadi KT, Maarschalk S, Grobler AC, Mansoor LE, Frohlich JA, Madlala B, Ngcobo N, Abdool Karim SS, Abdool Karim Q.
AIDS & Behavior 2014; 18(5):849–854.

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High rates of tuberculosis in patients accessing HAART in rural South Africa.
Naidoo K, Abdool Karim Q, Bhushan A, Naidoo K, Yende-Zuma N, McHunu PK, Frohlich J, Karim F, Upfold M, Kocheleff P, Abdool Karim SS.
JAIDS 2014; 65(4):438-446.

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TRIM5α and TRIM22 are differentially regulated according to HIV-1 infection phase and compartment.
Singh R, Patel V, Mureithi M, Naranbhai V, Ramsuran D, Tulsi S, Hiramen K, Werner L, Mlisana K, Altfeld M, Luban J, Kasprowicz V, Dheda K, Abdool Karim S, Ndung'u T.
Journal of Virology 2014; 88(8):4291-303.

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Recombinant adenovirus type 5 HIV gag/pol/nef vaccine in South Africa: unblinded, long-term follow-up of the phase 2b HVTN 503/Phambili study.
Gray GE, Moodie Z, Metch B, Gilbert PB, Bekker L-G, Churchyard G, Nchabeleng M, Mlisana K, Laher F, Roux S, Mngadi K, Innes C, Mathebula M, Allen M, McElrath JM, Robertson M, Kublin J, Corey L, on behalf of the HVTN 503/Phambili study team.
The Lancet Infectious Diseases 2014; 14(5):388-96.

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Inclusion of adolescent girls in HIV prevention research an imperative for an AIDS-free generation.
Abdool Karim Q, Dellar R.
Journal of the International AIDS Society 2014; 17(1):19075.

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Limited HIV-1 superinfection in seroconverters from the CAPRISA 004 microbicide trial.
Redd AD, Mullis CE, Wendel SK, Sheward D, Martens C, Bruno D, Werner L, Garrett NJ, Abdool Karim Q, Williamson C, Porcella SF, Quinn TC, Abdool Karim SS.
Journal of Clinical Microbiology 2014; 52(3):844-848.

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Efficacy and Safety of an Extended Nevirapine Regimen in Infants of Breastfeeding Mothers With HIV-1 Infection for Prevention of HIV-1 Transmission (HPTN 046): 18-Month Results of a Randomized, Double-Blind, Placebo-Controlled Trial.
Fowler MG, Coovadia H, Herron CM, Maldonado Y, Chipato T, Moodley D, Musoke P, Aizire J, Manji K, Stranix-Chibanda L, Fawzi W, Chetty V, Msweli L, Kisenge R, Brown E, Mwatha A, Eshleman SH, Richardson P, Allen M, George K, Andrew P, Zwerski S, Mofenson LM, Jackson JB; HPTN 046 Protocol Team.
J Acquir Immune Defic Syndr 2014; 65(3):366-374.

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Ratio of Monocytes to Lymphocytes in Peripheral Blood Identifies Adults at Risk of Incident Tuberculosis Among HIV-Infected Adults Initiating Antiretroviral Therapy.
Naranbhai V, Hill AVS, Abdool Karim SS, Naidoo K, Abdool Karim Q, Warimwe GM, Mc Shane H, Fletcher H.
Journal of Infectious Diseases 2014; 209(4):500-509.

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Long walk to treatment for XDR tuberculosis in South Africa.
O'Donnell MR, Schluger NW.
Lancet 2014; 383(9924):1193-94.

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Effects of introducing Xpert MTB/RIF test on multi-drug resistant tuberculosis diagnosis in KwaZulu-Natal South Africa.
Dlamini-Mvelase NR, Werner L, Phili R, Cele LP, Mlisana KP.
BMC infectious diseases 2014; 14(1):442. doi: 10.1186/1471-2334-14-442.

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Women’s perceptions of the benefits and risks of skin-lightening creams in two South African communities.
Dlova N, Hamed SH, Tsoka-Gwegweni J, Grobler A, Hift R.
Journal of Cosmetic Dermatology 2014; 13(3): 236-241.

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Assessing the Implementation Effectiveness and Safety of 1% Tenofovir Gel Provision through Family Planning Services in KwaZulu-Natal, South Africa: Study Protocol for an Open-Label Randomized Controlled Trial.
Mansoor LE, Abdool Karim Q, Mngadi KT, Dlamini S, Montague C, Nkomonde N, Mvandaba N, Baxter C, Gengiah TN, Samsunder N, Dawood H, Grobler A, Frohlich JA, Abdool Karim SS.
Trials 2014; 15(1):496.

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Appeal to global donors to save the Treatment Action Campaign.
Piot P, Barré-Sinoussi F, Abdool Karim Q, Abdool Karim SS, Beyrer C.
Lancet 2014; 384(9959):e62. doi: 10.1016/S0140-6736(14)62045-6.

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Low adverse event rates following voluntary medical male circumcision in a high HIV disease burden public sector prevention programme in South Africa.
Phili R, Abdool Karim Q, Ngesa O.
Journal of the International AIDS Society 2014; 17:19275. doi: 10.7448/IAS.17.1.19275.

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The association between the ratio of monocytes:lymphocytes and risk of tuberculosis(TB) amongst HIV infected postpartum women.
Naranbhai V, Moodley D, Chipato T, Stranix-Chibanda L, Nakabaiito C, Kamateeka M, Musoke P, Manji K, George K, Emel LM, Richardson P, Andrew P, Fowler M, Fletcher H, McShane H, Coovadia HM, Hill AVS, for the HPTN 046 protocol team.
JAIDS 2014; 67(5):573-575.

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Trial participation disclosure and gel use behavior in the CAPRISA 004 tenofovir gel trial.
Succop SM, MacQueen KM, van Loggerenberg F, Majola N, Abdool Karim Q, Abdool Karim SS.
AIDS Care 2014; 26(12):1521-5.

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Y chromosome and HIV DNA Detection in Vaginal Swabs as Biomarkers of Semen and HIV Exposure in Women.
Penrose KJ, Richardson BA, Besson G, Dezzutti CS, Herold BC, Abdool Karim SS, Mellors JW, and Parikh UM. on behalf of the MTN Biomedical Sciences Working Group and the HPTN 035 Protocol Team.
Sexually Transmitted Diseases 2014; 41(11):674-679.

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Anaemia in Pregnancy is Associated with Advanced HIV Disease.
Nandla Vl, Moodley D, Grobler A, Bagratee J,  Maharaj NR, Richardson P.
PLOS One 2014 Sep; 9(9):e106103.

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Nef-mediated down-regulation of CD4 and HLA class I in HIV-1 subtype C infection: association with disease progression and influence of immune pressure.
Mann JK, Chopera D, Omarjee S, Kuang XT, Le AQ, Anmole G, Danroth R, Mwimanzi P, Reddy T, Carlson J, Radebe M, Goulder P, Walker BD, Abdool Karim S; Novitsky V, Williamson C, Brockman MA, Brumme ZL, Ndung'u T.
Virology 2014; 468-470C:214-225.

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Immunoglobulin Gene Insertions and Deletions in the Affinity Maturation of HIV-1 Broadly Reactive Neutralizing Antibodies.
Kepler TB, Liao HX, Alam SM, Bhaskarabhatla R, Zhang R, Yandava C, Stewart S, Anasti K, Kelsoe G, Parks R, Lloyd KE, Stolarchuk C, Pritchett J, Solomon E, Friberg E, Morris L, Abdool Karim SS, Cohen MS, Walter E, Moody MA, Wu X, Altae-Tran HR, Georgiev IS, Kwong PD, Boyd SD, Fire AZ, Mascola JR, Haynes BF.
Cell Host & Microbe 2014 Sept;16(3):304-13.

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ARV-based HIV prevention for women where we are in 2014.
Mastro TD, Sista N, Abdool Karim Q.
Journal of the International AIDS Society 2014; 17(3):19154.

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Malnutrition associated with unfavorable outcome and death among South African MDR-TB and HIV co-infected children.
Hicks RM, Padayatchi N, Shah NS, Wolf A, Werner L, Sunkari VB, O'Donnell MR.
International Journal of Tuberculosis and Lung Disease 2014; 18(9): 1074-1083.

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HIV, Tuberculosis, and Noncommunicable Diseases: What Is Known About the Costs, Effects, and Cost-effectiveness of Integrated Care?
Hyle EP, Naidoo N, Su AE, El-Sadr WM, Freedberg KA.
JAIDS 2014; 67(Suppl.1):S87–S95. doi: 10.1097/QAI.0000000000000254.

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Low rifampicin concentrations in tuberculosis patients with HIV infection.
Gengiah T, Botha J, Soowamber D, Naidoo K, Abdool Karim SS.
Journal of Infection in Developing Countries 2014; 8(8):987-993.

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Defining genital tract cytokine signatures of sexually transmitted infections and bacterial vaginosis in women at high risk of HIV infection: a cross-sectional study.
Masson L, Mlisana K, Little F, Werner L, Mkhize NN, Ronacher K, Gamieldien H, Williamson C, Mckinnon LR, Walzl G, Abdool Karim Q, Abdool Karim SS, Passmore JA-S.
Sexually Transmitted Infections 2014; 90(8):580–587.

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HIV Infection in High School Students in Rural South Africa: Role of Transmissions Among Students.
Kharsany ABM, Buthelezi TJ, Frohlich JA, Yende-Zuma N, Samsunder N, Mahlase G, Williamson C, Travers S, Marais JC, Dellar RC, Abdool Karim SS, Abdool Karim Q.
AIDS Research and Human Retroviruses 2014; 30(10):956-65.

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Role of semen in altering the balance between inflammation and tolerance in the female genital tract: Does it contribute to HIV risk?
Rametse CL, Olivier AJ, Masson L, Barnabas S, McKinnon LR, Ngcapu S, Liebenberg LJ, Jaumdally SZ, Gray CM, Jaspan HB, Passmore J-AS.
Viral Immunology 2014; 27(5):200-6.

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HIV-1 specific IgA detected in vaginal secretions of HIV uninfected women participating in a microbicide trial in Southern Africa are primarily directed toward gp120 and gp140 specificities.
Seaton KE, Ballweber L, Lan A, Donathan M, Hughes S, Vojtech L, Moody MA, Liao H-X, Haynes BF, Galloway CG, Richardson BA, Abdool Karim S, Dezzutti CS, McElrath JM, Tomaras GD, Hladik F.
PLOS ONE 2014; 9(7): e101863.

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Clofazimine in the treatment of extensively drug-resistant tuberculosis with HIV coinfection in South Africa: A retrospective cohort study.
Padayatchi N, Gopal M, Naidoo R, Werner L, Naidoo K, Master I, O'Donnell M.
Journal of Antimicrobial Chemotherapy 2014; 69(11):3103-7.

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Rapid disease progression in HIV-1 subtype C infected South African women.
Mlisana K, Werner L, Garrett NJ, McKinnon LR, van Loggerenberg F, Passmore J-AS, Gray CM, Morris L, Williamson C, Abdool Karim SS and the CAPRISA 002 Study Team.
Clinical Infectious Diseases 2014; 59(9):1322-31.

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Barriers and facilitators to the uptake of voluntary medical male circumcision (VMMC) among adolescent boys in KwaZulu–Natal, South Africa.
George G, Strauss M, Chirawu P, Rhodes B, Frohlich J, Montague C, Govender K.
African Journal of AIDS Research 2014; 13(2):179-187.

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HPTN 035 phase II/IIb randomised safety and effectiveness study of the vaginal microbicides BufferGel and 0.5% PRO 2000 for the prevention of sexually transmitted infections in women.
Guffey MB, Richardson B, Husnik M, Makanani B, Chilongozi D, Yu E, Ramjee G, Mgodi N, Gomez K, Hillier SL, Abdool Karim S, on behalf of the HIV Prevention Trials Network (HPTN) 035 Study Team.
Sexually Transmitted Infections 2014; 90(5):363-369.

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Prevalence of HIV, HSV-2 and pregnancy among high school students in rural KwaZulu-Natal, South Africa: a bio-behavioural cross-sectional survey.
Abdool Karim Q, Kharsany AB, Leask K, Ntombela F, Humphries H, Frohlich JA, Samsunder N, Grobler A, Dellar R, Abdool Karim SS.
Sexually Transmitted Infections 2014; 90(8):620-6.

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Impact of Antiretroviral Therapy on Health-Related Quality of Life among South African Women in the CAPRISA 002 Acute Infection Study.
Tomita A, Garrett N, Werner L, Burns JK, Ngcobo N, Zuma N, Mlisana K, van Loggerenberg F, Abdool Karim SS.
AIDS & Behavior 2014 Sep;18(9):1801-7.

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Role of oral candidiasis in TB and HIV co-infection: AIDS Clinical Trial Group Protocol A5253.
Shiboski CH, Chen H, Ghannoum MA, Komarow L, Evans S, Mukherjee PK, Isham N, Katzenstein D, Asmelash A, Omozoarhe AE, Gengiah S, Allen R, Tripathy S, Swindells S, the AIDS Clinical Trials Group Network and the Oral HIV/AIDS Research Alliance.
International Journal of Tuberculosis and Lung Disease 2014; 18(6): 682-688.

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Implementation of Adolescent-Friendly Voluntary Medical Male Circumcision Using a School Based Recruitment Programme in Rural KwaZulu-Natal, South Africa.
Montague C, Ngcobo N, Mahlase G, Frohlich J, Pillay C, Yende-Zuma N, Humphries H, Dellar R, Naidoo K, Abdool Karim Q.
PLOS One 2014; 9(5):e96468.

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Maturation of Innate Responses to Mycobacteria over the First Nine Months of Life.
Shey MS, Nemes E, Whatney W, de Kock M, Africa H, Barnard C, van Rooyen M, Stone L, Riou C, Kollmann T, Hawn TR, Scriba TJ, Hanekom WA.
The Journal of Immunology 2014; 192(10):4833-43.

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The HIV Epidemic in Southern Africa – is an AIDS free generation possible?
Delva W, Abdool Karim Q.
Current HIV/AIDS Reports 2014 Jun; 11(2):99-108.

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The Preventive Misconception: Experiences from CAPRISA 004.
Dellar RC, Abdool Karim Q, Mansoor LE, Grobler A, Humphries H, Werner L, Ntombela F, Luthuli L, Abdool Karim SS.
AIDS & Behavior 2014; 18(9):1746-52.

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Assessing adherence in the CAPRISA 004 tenofovir gel HIV prevention trial: Results of a nested case-control study.
MacQueen KM, Weaver MA, van Loggerenberg F, Succop S, Majola N, Taylor D, Abdool Karim Q, Abdool Karim S.
AIDS & Behavior 2014; 18(5):826–832.

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High Tuberculosis Prevalence in a South African Prison: The Need for Routine Tuberculosis Screening.
Telisinghe L, Fielding KL, Malden JL, Hanifa Y, Churchyard GJ, Grant AD, Charalambous S.
PLoS One 2014; 9(1):e87262.

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Adherence challenges with drugs for pre-exposure prophylaxis to prevent HIV infection.
Gengiah TN, Moosa A, Naidoo A, Mansoor LE.
International Journal of Clinical Pharmacy 2014; 36(1):70-85.

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Differential impact of magnitude, polyfunctional capacity and specificity of HIV-specific CD8+ T cell responses on HIV viral set point.
Riou C, Burgers W, Mlisana K, Koup R, Roederer M, Abdool Karim S, Williamson C, Gray C.
Journal of Virology 2014; 88(3): 1819-1824.

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Bacterial Vaginosis and the Risk of Trichomonas vaginalis Acquisition Among HIV-1 Negative Women.
Balkus J.E, Richardson B.A, Rabe L.K, Taha T.E, Mgodi N, Kasaro M.P, Ramjee G, Hoffman I.F, Abdool Karim, S S.
Sexually Transmitted Diseases 2014; 41(2): 123-128.

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Improved survival in multidrug-resistant tuberculosis patients receiving integrated tuberculosis and antiretroviral treatment in the SAPiT Trial.
Padayatchi N, Abdool Karim SS, Naidoo K, Grobler A, Friedland G.
International Journal of Tuberculosis and Lung Disease 2014; 18(2):147-54.

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Retrospective. Nelson R. Mandela (1918-2013)
Abdool Karim SS
Science 2014 10;343(6167):150

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The Need for Routine Tuberculosis Screening.
Telisinghe L, Fielding KL, Malden JL, Hanifa Y, Churchyard GJ, Grant AD, Charalambous S. PLoS One 2014; 9(1): e87262. doi:10.1371/journal.pone.0087262

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A systematic review of definitions of extreme phenotypes of HIV control and progression.
Gurdasani D, Iles L, Dillon DG, Young EH, Olson AD, Naranbhai V, Fidler S, Gkrania-Klotsas E, Post F, Kellam P, Porter K, Sandhu M.
AIDS 2014; 28(2):149-162.

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Retrospective: Nelson R. Mandela (1918-2013).
Abdool Karim SS.
Science 2014 Jan 10;343(6167):150. doi: 10.1126/science.1249822.

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Microbicides for Prevention of HIV Infection: Clinical Efficacy Trials
Abdool Karim SS, Baxter C.
Current Topics Microbiology Immunology 2014; 383: 97-115.

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Health-related Quality of Life Dynamics of HIV-positive ART-naïve South African Women: Evidence from the CAPRISA 002 Acute Infection Cohort Study
Tomita A, Garrett N, Werner L, Burns J, Mpanza L, Mlisana K, van Loggerenberg F, Abdool Karim SS.
AIDS and Behavior 2014; 18(6):1114-23.

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Changes to antiretroviral drug regimens during integrated TB-HIV treatment: Results of the SAPiT trial.
Naidoo A, Naidoo K, Yende-Zuma N, Gengiah TN, Padayatchi N, Gray AL, Bamber S, Nair G, Abdool Karim SS.
Antiviral Therapy 2014; 19(2):161-169.

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