Course Lecture Notes
Powerpoint
PDF
Introduction
Introduction
Alignment
Alignment
Characters and Parsimony Analysis
Characters and Parsimony Analysis
Maximum Likelihood
Maximum Likelihood
(
print version here
)
Protein Phylogenies
Protein Phylogenies
Distance Matrix Methods
Distance Matrix Methods
Robustness of Data and Trees
Robustness of Data and Hypotheses
Example from Early Eukaryotes
Example from Early Eukaryotes
Concluding Remarks
Concluding Remarks
List of References
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Note on Neighbor-Joining
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Some Likelihood Notes
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Zen Guide to Likelihood
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Alternative likelihood presentation
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